Issues

• HMM model load speed

  question
  althonos/pyhmmer#101 · Filter by author KGerhardt opened on Apr 22, 2026
  2

• What is the best way to "fetch" a particular HMM name from a massive pHMM file using pyhmmer?

  althonos/pyhmmer#100 · Filter by author camilogarciabotero opened on Apr 11, 2026
  2

• [Question] How to set number of threads for hmmbuild?

  enhancement
  althonos/pyhmmer#98 · Filter by author robcli opened on Feb 13, 2026
  2

• Question about extract columns from hmmsearch domain output

  question
  althonos/pyhmmer#82 · Filter by author Xinpeng021001 opened on Dec 19, 2024
  1

• Running the hmmsearch

  question
  althonos/pyhmmer#79 · Filter by author SergeyBaikal opened on Oct 14, 2024
  3

• Parameter to remove insert column in hmmalign

  enhancement
  althonos/pyhmmer#74 · Filter by author apcamargo opened on Aug 16, 2024

• Return a single TopHits object when passing a single hmm to hmmsearch

  enhancementquestion
  althonos/pyhmmer#73 · Filter by author alex-hh opened on Aug 16, 2024

• BUG: plan7.HMM.validate() fails to raise exceptions with ill formatted hmm profiles

  bugexternal
  althonos/pyhmmer#69 · Filter by author Sann5 opened on May 31, 2024
  1

• Apply cutoffs for domains

  bugquestion
  althonos/pyhmmer#65 · Filter by author apcamargo opened on Apr 7, 2024
  5

• Guess bit_cutoffs in hmmsearch

  enhancement
  althonos/pyhmmer#64 · Filter by author jpjarnoux opened on Mar 29, 2024

• cannot reproduce example for pyhmmer.hmmer.hmmsearch

  question
  althonos/pyhmmer#58 · Filter by author erfanshekarriz opened on Dec 9, 2023
  1

• Production stable or WIP

  question
  althonos/pyhmmer#45 · Filter by author oschwengers opened on Jun 27, 2023
  1

• Possibility to filter alignment results on coverage between HMM and target

  question
  althonos/pyhmmer#27 · Filter by author jpjarnoux opened on Nov 28, 2022
  6

• zip argument #1 must support iteration error + other question

  question
  althonos/pyhmmer#17 · Filter by author willhuynh11 opened on Apr 18, 2022
  1

• ValueError: Could not determine format of file: '/dbfs/mnt/LuxC.sto'

  question
  althonos/pyhmmer#10 · Filter by author lzhangUT opened on Sep 22, 2021
  3

• Use hpc_hmmsearch

  enhancement
  althonos/pyhmmer#8 · Filter by author apcamargo opened on Jul 7, 2021
  6