Issues

• Discrepancy between Reaction biochemistry table and reactions upon reconstruction

  ModelSEED/ProbModelSEED#112 · Filter by author ctseto opened on Mar 31, 2017
  4

• Template selection during model reconstruction

  ModelSEED/ProbModelSEED#111 · Filter by author ctseto opened on Mar 31, 2017
  4

• Issues with reconstruction on custom media

  ModelSEED/ProbModelSEED#99 · Filter by author nconrad opened on Jun 7, 2016

• Issues with copy_model

  ModelSEED/ProbModelSEED#95 · Filter by author nconrad opened on Oct 20, 2015
  1

• Add gapfilled reactions to model on integrate

  important
  ModelSEED/ProbModelSEED#91 · Filter by author nconrad opened on Sep 3, 2015 · UI 2.0 Beta Push
  1

• Need users' models from old modelseed?

  important
  ModelSEED/ProbModelSEED#90 · Filter by author nconrad opened on Aug 28, 2015 · UI 2.0 Beta Push

• put gapfill reactions in model object on integrating

  important
  ModelSEED/ProbModelSEED#89 · Filter by author nconrad opened on Aug 28, 2015 · UI 2.0 Beta Push

• Need published and reference models

  important
  ModelSEED/ProbModelSEED#88 · Filter by author nconrad opened on Aug 28, 2015 · UI 2.0 Beta Push
  1

• Curate model templates

  ModelSEED/ProbModelSEED#86 · Filter by author mmundy42 opened on Aug 20, 2015 · Switch to new model templates

• Create model templates using extended biochemistry

  ModelSEED/ProbModelSEED#85 · Filter by author mmundy42 opened on Aug 20, 2015 · Switch to new model templates

• Switch to new extended biochemistry

  ModelSEED/ProbModelSEED#84 · Filter by author mmundy42 opened on Aug 20, 2015 · Switch to new model templates

• copy_model is overwriting

  ModelSEED/ProbModelSEED#82 · Filter by author nconrad opened on Aug 18, 2015
  3

• list_models() and get_model() differences

  ModelSEED/ProbModelSEED#81 · Filter by author mmundy42 opened on Aug 13, 2015
  1

• odd empty hash returned by copy_model

  ModelSEED/ProbModelSEED#80 · Filter by author nconrad opened on Aug 13, 2015

• Differences between media and patric-media folder in workspace

  ModelSEED/ProbModelSEED#79 · Filter by author mmundy42 opened on Aug 12, 2015

• Default charge of reactions containing unknown structures

  ModelSEED/ProbModelSEED#48 · Filter by author samseaver opened on Jul 17, 2015
  4

• get_fba (FBA Table) API Method

  ModelSEED/ProbModelSEED#43 · Filter by author nconrad opened on Jul 14, 2015
  3

• reconstruct/gapfill/fba response

  important
  ModelSEED/ProbModelSEED#39 · Filter by author nconrad opened on Jul 10, 2015 · UI 2.0 Beta Push
  4

• Gram positive and gram negative model templates are swapped

  ModelSEED/ProbModelSEED#37 · Filter by author mmundy42 opened on Jul 9, 2015

• Different genes IDs link to the same page

  ModelSEED/ProbModelSEED#36 · Filter by author jplfaria opened on Jul 9, 2015
  2

  

• Gapfills should always start from the same base model

  ModelSEED/ProbModelSEED#34 · Filter by author mmundy42 opened on Jun 30, 2015

• Unrecognized reference format error

  ModelSEED/ProbModelSEED#32 · Filter by author mmundy42 opened on Jun 30, 2015

• list_models is quite slow

  ModelSEED/ProbModelSEED#26 · Filter by author nconrad opened on Jun 22, 2015
  5

• Model edits are not taken into account when retrieving a model from workspace

  ModelSEED/ProbModelSEED#24 · Filter by author mmundy42 opened on Jun 17, 2015

• Add probabilistic annotation algorithm

  ModelSEED/ProbModelSEED#23 · Filter by author mmundy42 opened on Jun 17, 2015
  1