Issues

• Running AlphaLink2 without template

  Rappsilber-Laboratory/AlphaLink2#54 · Filter by author jimfeng9705 opened on Apr 22, 2026

• RuntimeError: PytorchStreamReader failed reading zip archive: failed finding central directory

  Rappsilber-Laboratory/AlphaLink2#50 · Filter by author codeforom opened on Jun 13, 2025
  1

• Reduced database setup

  Rappsilber-Laboratory/AlphaLink2#49 · Filter by author drames29 opened on Jun 2, 2025
  1

• Array has an inhomogeneous shaper after 1 dimensions at features generation

  Rappsilber-Laboratory/AlphaLink2#48 · Filter by author dacolombo opened on May 20, 2025
  1

• 404 on dptech-corp org page and Uni-Core v0.0.3 wheel download

  Rappsilber-Laboratory/AlphaLink2#47 · Filter by author wlin16 opened on May 18, 2025
  1

• Chains reordered when duplicate sequences are present

  Rappsilber-Laboratory/AlphaLink2#46 · Filter by author jgreener64 opened on Apr 25, 2025
  1

• Conflicts with ml-dtypes package

  Rappsilber-Laboratory/AlphaLink2#45 · Filter by author almeida85 opened on Apr 25, 2025
  1

• The total length of multimer sequences is too long

  Rappsilber-Laboratory/AlphaLink2#44 · Filter by author EricCCLiang opened on Apr 23, 2025
  2

• Issue with Crosslink Satisfaction for Ecm29–Rpt4 Complex Prediction

  Rappsilber-Laboratory/AlphaLink2#43 · Filter by author eunseo05058 opened on Apr 12, 2025
  1

• Crosslink Residue Selection for AlphaLink 2

  Rappsilber-Laboratory/AlphaLink2#42 · Filter by author jimfeng9705 opened on Apr 4, 2025
  1

• crosslinks satisfaction

  Rappsilber-Laboratory/AlphaLink2#40 · Filter by author jimfeng9705 opened on Feb 17, 2025
  19

• Pending State for Step 'Generate MSAs and templates with MMseqs2'

  Rappsilber-Laboratory/AlphaLink2#39 · Filter by author Zeno-kimono opened on Feb 9, 2025
  1

• GPU utilization

  Rappsilber-Laboratory/AlphaLink2#36 · Filter by author jimfeng9705 opened on Jan 4, 2025
  5

• homodimeric protein complexes

  Rappsilber-Laboratory/AlphaLink2#34 · Filter by author jimfeng9705 opened on Nov 19, 2024
  24

• Question: format of distance restraints

  Rappsilber-Laboratory/AlphaLink2#33 · Filter by author BelyaevaJuly opened on Nov 14, 2024
  1

• Using MMseqs2

  Rappsilber-Laboratory/AlphaLink2#32 · Filter by author adahal258 opened on Aug 27, 2024
  1

• Index error

  Rappsilber-Laboratory/AlphaLink2#31 · Filter by author jimfeng9705 opened on Aug 26, 2024
  4

• Getting log.txt file

  Rappsilber-Laboratory/AlphaLink2#30 · Filter by author adahal258 opened on Aug 26, 2024
  1

• Changing parameters in Alphalink2

  Rappsilber-Laboratory/AlphaLink2#28 · Filter by author soumyaremesh opened on Jul 26, 2024
  4

• MSA Subsampling Feature

  Rappsilber-Laboratory/AlphaLink2#27 · Filter by author camillapaleari opened on Jul 8, 2024
  6

• Installation on HPC with preinstalled AlphaFold

  Rappsilber-Laboratory/AlphaLink2#23 · Filter by author AntKuzmenko opened on Jun 6, 2024
  1

• Meaning of "crosslink satisfaction"?

  Rappsilber-Laboratory/AlphaLink2#22 · Filter by author joshwa-s opened on Mar 14, 2024
  3

• Incorporation of monolinks

  Rappsilber-Laboratory/AlphaLink2#21 · Filter by author enriquead1 opened on Feb 21, 2024
  2

• Colab Notebook fails at generate MSA step - T4 GPU runtime

  Rappsilber-Laboratory/AlphaLink2#17 · Filter by author RCowan1983 opened on Jan 3, 2024
  1

• More details about training process

  Rappsilber-Laboratory/AlphaLink2#15 · Filter by author Li-dacheng opened on Nov 30, 2023
  3