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1. skill-state-runtime skill-state-runtime Public

   SKILL.state runtime - scalable long-horizon agent skills with explicit structured state (arXiv:2608.26263). Model-agnostic, stdlib-only.

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2. claude-code-sourcemap claude-code-sourcemap Public

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3. gapit-gwas-skill gapit-gwas-skill Public

   End-to-end GAPIT v4.x GWAS agent skill: self-verifying mamba env, format-aware input QC, detached long runs, hit summary + interpretation report

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4. trace-as-state trace-as-state Public

   A two-pass long-context method: derive the task state first, put it before the material, then re-read. Agent skill. Based on arXiv:2609.02702.

5. protein-figure-skill protein-figure-skill Public

   Publication-ready protein structure figures: an agent skill on PyMOL-PUB (Bioinformatics 2024) + PyMOL 2.5.0, with 14 validated style recipes and 3 standard-class templates. SKILL.md + templates + …

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6. bioinfo-trust-framework bioinfo-trust-framework Public

   A portable, agent-agnostic skill for the question that matters more than any tool choice: can a bioinformatics result be trusted? Evidence chain, actor layer, four gates, three risk tiers, plus a s…

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