Issues

• 脚本GFF3_database_validation中，对蛋白序列进行HMM和BLASTP验证脚本执行错误

  chenlianfu/geta#40 · Filter by author FanruiMeng opened on Dec 17, 2025

• 找不到文件：Can not open file

  chenlianfu/geta#39 · Filter by author yuwanziaaa opened on Apr 24, 2025

• 三代全长转录组

  chenlianfu/geta#38 · Filter by author kpunap opened on Dec 2, 2024
  1

• 2.homolog_prediction error

  chenlianfu/geta#37 · Filter by author LluYyao opened on Aug 12, 2024
  4

• Genewise error

  chenlianfu/geta#36 · Filter by author lzyskyline opened on Jul 19, 2024
  2

• Use miniprot2 to accurately map protein ?

  chenlianfu/geta#35 · Filter by author zhangyixing3 opened on May 9, 2024

• 最后protein.fasta文件中，很多氨基酸序列含有多个终止信号*，gff3注释文件中 部分gene位置注释为负值

  chenlianfu/geta#34 · Filter by author wlhCNU opened on Mar 13, 2024

• error:para_RepeatMasker

  chenlianfu/geta#33 · Filter by author changchuanjun opened on Feb 26, 2024
  5

• out.homolog_prediction.gff3为空

  chenlianfu/geta#32 · Filter by author linshengnan09 opened on Dec 25, 2023
  2

• Step 6: CombineGeneModels #6.1 出现问题

  chenlianfu/geta#30 · Filter by author QuintoHe opened on Nov 21, 2023

• augustus的模型训练这步很慢

  chenlianfu/geta#29 · Filter by author feiyu007 opened on Nov 21, 2023
  1

• Can not create file /Date/geta/VP_GENOME_final/annotation/VPXY/VPXX.tmp/6.combineGeneModels/paraAlternative_splicing_analysis.ge.tmp/seq340.base_depth.txt, Too many open files at /home/geta/soft/geta-master/bin/paraAlternative_splicing_analysis line 127, <IN> line 174922.

  chenlianfu/geta#28 · Filter by author woshi0655 opened on Nov 20, 2023
  1

• 4G大小基因组报错

  chenlianfu/geta#27 · Filter by author INeedR99 opened on Oct 31, 2023
  1

• diamond报错Computing alignments... Error: std::bad_alloc

  chenlianfu/geta#26 · Filter by author monian1113 opened on Oct 7, 2023

• Modification of non-creatable array value attempted, subscript -1 at /home/geta/soft/geta-master/bin/homolog_prediction.03HitToGenePrediction line 130, <IN> line 4

  chenlianfu/geta#25 · Filter by author woshi0655 opened on Aug 12, 2023
  1

• RNA-seq对cds序列比对率太低

  chenlianfu/geta#23 · Filter by author xingjianfeng100 opened on Jul 7, 2023

• 需要安装LTRfinder吗

  chenlianfu/geta#22 · Filter by author Athena010 opened on Apr 1, 2023

• 求助第三步Transcript 运行报错

  chenlianfu/geta#21 · Filter by author Lithops123 opened on Feb 23, 2023
  1

• 运行报错 merge_repeatMasker_out.pl line 40

  chenlianfu/geta#20 · Filter by author lyh-bio opened on Dec 6, 2022
  9

• 注释结果注释出两个不同基因

  chenlianfu/geta#19 · Filter by author lxz1019 opened on Oct 29, 2022
  1

• 三代全长及注释基因过多

  chenlianfu/geta#18 · Filter by author xingjianfeng100 opened on Oct 22, 2022
  5

• 合并gff3结果中发现问题

  chenlianfu/geta#17 · Filter by author YuboWang1994 opened on Aug 9, 2022
  1

• 重复序列trf注释

  chenlianfu/geta#16 · Filter by author CrawlingSponge opened on Jul 29, 2022
  1

• anfnotation tools contig level assebly

  chenlianfu/geta#15 · Filter by author naahraissa opened on Apr 30, 2022

• geta

  chenlianfu/geta#14 · Filter by author DeshengZou opened on Apr 25, 2022