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Allow compilation with Visual Studio; add flag for output file instead of stdout; document flags in usage arg; allow forced align to produce same output format as train+align. - #34

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Allow compilation with Visual Studio; add flag for output file instead of stdout; document flags in usage arg; allow forced align to produce same output format as train+align.#34
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Merge pull request #1 from anthonyaue/anthaue/parallelize_apply_align

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