Issues

• SVT_SparseMatrix Return Type for to_sparse_matrix

  single-cell-data/TileDB-SOMA#4471 · Filter by author DarioS opened on Sep 9, 2026

• [Feature request] [r] anndataR integration

  single-cell-data/TileDB-SOMA#4469 · Filter by author rcannood opened on Aug 14, 2026
  4

• [Bug] from_anndata crashes with "quote_from_bytes() expected bytes" on anndata 0.13 (X stored under None layer key)

  single-cell-data/TileDB-SOMA#4466 · Filter by author royassis opened on Jul 8, 2026
  1

• tiledbsoma.open() on S3 hangs with no error when credentials come from an AWS SSO profile (aws sso login)

  Bug

  single-cell-data/TileDB-SOMA#4465 · Filter by author royassis opened on Jun 16, 2026
  7

  

• [Bug] Tutorial Code Error

  single-cell-data/TileDB-SOMA#4463 · Filter by author DarioS opened on May 12, 2026
  6

  

• bit64 version 4.6.0.1 causing cryptic soma_joinid error

  single-cell-data/TileDB-SOMA#4462 · Filter by author sarahhp opened on May 8, 2026
  3

• [Bug] Updating obs dataframe via update_obs after deleting fails.

  single-cell-data/TileDB-SOMA#4439 · Filter by author scriptbotprime opened on Apr 13, 2026
  1

  

• [Bug] malloc issue when using obs_query

  single-cell-data/TileDB-SOMA#4437 · Filter by author royassis opened on Mar 24, 2026
  5

• Failed scheduled CI run

  bug
  single-cell-data/TileDB-SOMA#4418 · Filter by author github-actions opened on Feb 18, 2026
  

• Design question - different protein panels in one TileDB Soma

  single-cell-data/TileDB-SOMA#4327 · Filter by author mattinbits opened on Dec 1, 2025
  4

  

• [Bug] [python] Cryptic error when opening database built under earlier version

  single-cell-data/TileDB-SOMA#4047 · Filter by author biostu24 opened on May 12, 2025
  1

• [User question] speed of a random access query

  single-cell-data/TileDB-SOMA#3990 · Filter by author sjfleming opened on Apr 17, 2025
  7

  

• [Bug] pip install tiledbsoma fails on ARM Linux with CMake 4

  single-cell-data/TileDB-SOMA#3890 · Filter by author ryan-williams opened on Apr 1, 2025
  

• [Bug] Unwanted obs columns are returned from ExperimentAxisQuery.to_anndata

  single-cell-data/TileDB-SOMA#3736 · Filter by author royassis opened on Feb 26, 2025
  3

  

• [c++] Extend libtiledbsoma unit tests on DenseNDArray for data writes

  enhancement
  single-cell-data/TileDB-SOMA#3721 · Filter by author johnkerl opened on Feb 21, 2025

• [feature request] Connect the core deletions API to tiledbsoma

  single-cell-data/TileDB-SOMA#3717 · Filter by author johnkerl opened on Feb 20, 2025

• How to query for NaN values?

  single-cell-data/TileDB-SOMA#3716 · Filter by author johnkerl opened on Feb 20, 2025

• [Feature request] update_obs: enable update of a subset

  single-cell-data/TileDB-SOMA#3715 · Filter by author nick-youngblut opened on Feb 20, 2025

• [r/ci] Evaluate TileDB-SOMA with R 4.4 on Linux and MacOS

  Task

  single-cell-data/TileDB-SOMA#3705 · Filter by author johnkerl opened on Feb 18, 2025
  1

  

• [Feature request] docs on chunked reading for large databases?

  single-cell-data/TileDB-SOMA#3702 · Filter by author nick-youngblut opened on Feb 15, 2025
  7

  

• [Feature request] Docs on editing/creating/deleting obs and var dataframe columns

  single-cell-data/TileDB-SOMA#3691 · Filter by author nick-youngblut opened on Feb 12, 2025
  6

  

• [Bug] IndexError: index out of bounds

  single-cell-data/TileDB-SOMA#3665 · Filter by author nick-youngblut opened on Feb 4, 2025
  

• [Bug] from_h5ad => tiledbsoma._exception.SOMAError ... database already exists

  single-cell-data/TileDB-SOMA#3664 · Filter by author nick-youngblut opened on Feb 4, 2025
  

• [python] Increase unit-test coverage for various metadata value-types

  enhancement
  single-cell-data/TileDB-SOMA#3654 · Filter by author johnkerl opened on Jan 31, 2025
  

• [python] Enhance Arrow-to-Pandas nullability conveyance for .to_pandas() output

  single-cell-data/TileDB-SOMA#3642 · Filter by author johnkerl opened on Jan 30, 2025
  1