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API Updates for `diffxpy` - #146

Merged

ilan-gold merged 93 commits into

developmentfrom

ig/update_api

Sep 21, 2022

Merged

API Updates for `diffxpy`#146
ilan-gold merged 93 commits into
developmentfrom
ig/update_api

Commits on Mar 15, 2022
- [WIP] The initializer...does everything?
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  7db054a
Commits on Mar 16, 2022
- [WIP] Refactor to fit model, accuracy test passes.
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  b48f54b
- [WIP] Rempve unecessary tests.
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  b46c924
Commits on Mar 18, 2022
- [WIP] Starting poisson model
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  3644676
- [WIP] Need to log likelihood
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  d397229
- [WIP] Beginning to handle log likelihood
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  f713052
- Seems right?
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Commits on Mar 19, 2022
- Fill in functions that might be needed for testing.
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  aefd6d4
Commits on Mar 20, 2022
- Make tests more consistent.
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  b156d21
- Clean up model a bit.
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  c861438
Commits on Mar 22, 2022
- [WIP] Fix log likelihood?
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  83afb4a
- Remove unfinished methods
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  505e106
Commits on Mar 27, 2022
- [WIP] Tests run but some don't pass
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  dcce334
- [WIP] Add error for scale model.
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Commits on Mar 31, 2022
- [WIP] Add normal scale modeling
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  289e492
Commits on Apr 7, 2022
- [WIP] Fix normal model ll
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  9e3b800
Commits on Apr 11, 2022
- Small fixes and clean up.
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  fb51f49
- Fix Poisson Log-Likelihood
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  0e00d45
- Fix missing export.
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  9cfbdf7
- Fix init_par function
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  3c86ebb
- Fix init_par for scale.
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  9c1cbde
Commits on Apr 20, 2022
- Add docs.
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  1fc13f5
- Add docs.
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  d3b559e
- Move to completed.
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  d6af35d
- Fix typing issue.
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  f225560
- Fix typing issue.
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  9c81ed4
Commits on Apr 25, 2022
- Start implementing base class.
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  3cdbc04
- Small changes
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  f2d5cbe
Commits on Apr 26, 2022
- [WIP] More small changes for diffxpy
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  a2fea8b
- [WIP] Package can now be imported and technically run in diffxpy
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  e1ec20a
Commits on Apr 28, 2022
- [WIP] Add feature names to generated data.
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  f7e221f
Commits on May 2, 2022
- Update API
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  24a6142
Commits on May 23, 2022
- Add/Remove more properties
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  9044037
- Make signature consistent.
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  6795d94
Commits on May 27, 2022
- Fix unused argument
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  919dcbd
Commits on Jun 1, 2022
- Fix categorical issue
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  dd2a63d
- Line length
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  8d79617
Commits on Jun 7, 2022
- Return term_names as coef_names to match matrix behavior when None
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  d6de38b
- Use columns for as_categorical.
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  7b5413b
Commits on Jun 9, 2022
- Merge branch 'ig/normal_model' into ig/update_api
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  804e063
- Use new container structure.
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  ad1ae50
- Fix normal model/model_container
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  a4d2e33
Commits on Jun 16, 2022
- Add setter functions to generate_artificial_data
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  c4c6c04
- Begin fixing normal model
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  a233eb1
Commits on Jun 19, 2022
- Update jacobian
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  9748fb6
Commits on Jun 20, 2022
- Use correct linker for scale.
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  02665be
Commits on Jun 26, 2022
- Use constrained matrix for normal location model.
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  b21cb98
Commits on Jun 27, 2022
- Fix FIM calculation
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  f2386da
Commits on Jul 3, 2022
- Fix jacobian calculation (?)
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  ecfaf88
- Fix size factors calculation
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  b2b6a84
- Refactor dask_compute
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  f396651
Commits on Jul 4, 2022
- Fix sparse array issue with init_par.
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  64c5e76
- Re pin deps.
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  f3b3f9e
- Re pin deps.
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  7061b97
Commits on Jul 5, 2022
- Use generalized jacobian calculation.
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  166e25e
Commits on Jul 13, 2022
- Add blank line
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  343746c
- Fix pre-commit
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  1b900a1
- Try to satisfy mypy
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  7436f4e
- Fix data tests.
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  5269821
- Blakc again.
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  f9717ed
- Update lock.
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  c041e21
- Fix pre-commit
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  d78327e
Commits on Jul 28, 2022
- Fix jacobian scale
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  90143eb
- Black.
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  d08fb00
- Small test cleanups.
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  592f0a4
- Move ll function.
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  ef5dd04
- Move ll function.
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  8989469
- Ok remove!
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  604298c
- Merge branch 'ig/normal_model' into ig/update_api
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  e160745
- Make small changes.
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  aae195e
- Add comment.
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  e2aea3a
- Fix pre-commit.
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  7757d54
- Remove bounds not needed.
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  ee1797a
- Add back in scale clipping
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  abe2124
Commits on Aug 5, 2022
- Remove ll.
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  2513c05
- Remove dask_compute.
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  2601f9b
- Merge branch 'ig/poisson' into ig/update_api
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  2435745
- Fix.
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  6cafa1d
- Remove dask_compute.
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  6d3c0e4
- Fix container.
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  4e7159f
- Fix fim/hessian.
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  8f07947
Commits on Aug 8, 2022
- Merge branch 'ig/full_branch' into ig/update_api
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  9f0886f
- Small poisson fixes.
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  cf4d1ff
Commits on Aug 9, 2022
- Try smaller average.
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  adfa5f5
Commits on Sep 19, 2022
- Fix init linked.
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  75ccdcc
Commits on Sep 21, 2022
- Merge branch 'development' into ig/update_api
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  ed4aac6
- Formatting.
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  ca12149
- try different lam.
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  d82c696
- Formatting.
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  4122186
- Try fixing lam issue on windows.
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  e35197a
- Actually fix problem.
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  612bf8c
- Still too big?
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  29d3c1e
- Revert
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  1777844

Commits

Commits on Mar 15, 2022

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