Issues

• Update Dependencies to support current Scanpy/Anndata versions running on Python 3.14

  enhancement
  theislab/spapros#411 · Filter by author nikofleischer opened on Apr 9, 2026

• Does it make sense to exclude ribo/mito genes?

  question
  theislab/spapros#410 · Filter by author chrissikath opened on Nov 18, 2025
  5

• Update SpaPros dependencies to support Python ≥3.11 and AnnData v0.12

  theislab/spapros#407 · Filter by author larsborm opened on Oct 13, 2025
  3

• KeyError when using prior_genes that are absent from an internal gene list

  bug
  theislab/spapros#406 · Filter by author rushilp7 opened on Aug 15, 2025
  2

• Bug Summary

  bug
  theislab/spapros#405 · Filter by author rushilp7 opened on Aug 6, 2025
  4

• Bug Summary

  bug
  theislab/spapros#404 · Filter by author TristanBeste opened on Jul 28, 2025
  1

• Gene correlation evaluation error

  bug
  theislab/spapros#402 · Filter by author rushilp7 opened on Jun 16, 2025

• branch pipelines no longer available for oligo-designer-toolsuite

  bug
  theislab/spapros#392 · Filter by author Hsu-Che-Wei opened on Mar 5, 2025
  1

• Kernel crashing with dataset of size 38237 × 32285

  bug
  theislab/spapros#361 · Filter by author HeleneHemmer opened on Jul 30, 2024
  11

• Feature Request Summary

  enhancement
  theislab/spapros#258 · Filter by author simomounir opened on Mar 30, 2023